U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CG42355 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 317969, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CG42355provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0259701
    Locus tag
    Dmel_CG42355
    See related
    AllianceGenome:FB:FBgn0259701
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG32308; Dmel\CG42355
    Old locus tag
    Dmel_CG32308
    Summary
    Predicted to be involved in sperm DNA condensation. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CG42355 in Genome Data Viewer
    Location:
    62C2-62C2; 3-1.5 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (2037371..2038224, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (2037371..2038224, complement)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Gustatory receptor-like 62b Neighboring gene Gustatory receptor-like 62c Neighboring gene sallimus Neighboring gene antisense RNA:CR42860 Neighboring gene antisense RNA:CR45802 Neighboring gene zormin

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The HMG-box-containing proteins tHMG-1 and tHMG-2 interact during the histone-to-protamine transition in Drosophila spermatogenesis. Gärtner SM, et al. Eur J Cell Biol, 2015 Jan. PMID 25464903
    2. The RNA export factor, Nxt1, is required for tissue specific transcriptional regulation. Caporilli S, et al. PLoS Genet, 2013 Jun. PMID 23754955, Free PMC Article
    3. A Testis-Specific Chaperone and the Chromatin Remodeler ISWI Mediate Repackaging of the Paternal Genome. Doyen CM, et al. Cell Rep, 2015 Nov 17. PMID 26549447
    4. Transition from a nucleosome-based to a protamine-based chromatin configuration during spermiogenesis in Drosophila. Rathke C, et al. J Cell Sci, 2007 May 1. PMID 17452629
    5. Characteristics and expression of lncRNA and transposable elements in Drosophila aneuploidy. Zhang S, et al. iScience, 2023 Dec 15. PMID 38125016, Free PMC Article

    See all (22) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in sperm DNA condensation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein
    Names
    CG42355-PC
    CG42355-PD

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      2037371..2038224 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001299982.1 → NP_001286911.1  uncharacterized protein Dmel_CG42355, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001286911.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9A0M4, Q29QZ5, Q8IRG2
      Conserved Domains (1) summary
      pfam06382
      Location:105 → 161
      DUF1074; Protein of unknown function (DUF1074)

    2. NM_001104008.3 → NP_001097478.3  uncharacterized protein Dmel_CG42355, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001097478.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9A0M4, Q29QZ5, Q8IRG2
      Conserved Domains (1) summary
      pfam06382
      Location:105 → 161
      DUF1074; Protein of unknown function (DUF1074)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B9A0M4 B9A0M4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools