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    CG42588 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 39457, updated on 9-Dec-2024

    Summary

    Official Symbol
    CG42588provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0260965
    Locus tag
    Dmel_CG42588
    See related
    AllianceGenome:FB:FBgn0260965
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BcDNA:SD20456; BP1016; CG11008; CG32108; CG34017; Dmel\CG42588
    Old locus tag
    Dmel_CG11008; Dmel_CG32108; Dmel_CG34017
    Summary
    Predicted to be involved in transcription by RNA polymerase III. Predicted to be part of transcription factor TFIIIC complex. Is expressed in spermatozoon. Orthologous to human GTF3C2 (general transcription factor IIIC subunit 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See CG42588 in Genome Data Viewer
    Location:
    69E4-69E5; 3-39 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (12814254..12824650)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (12807354..12817750)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Sin3A-associated protein 130 Neighboring gene uncharacterized protein Neighboring gene Splicing factor 3a subunit 2 Neighboring gene nebulosa Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Interactions

    General gene information

    Gene Ontology Provided by FlyBase

    Component Evidence Code Pubs
    part_of transcription factor TFIIIC complex  

    General protein information

    Preferred Names
    uncharacterized protein
    Names
    CG42588-PA
    CG42588-PB

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      12814254..12824650
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_140347.4 → NP_648604.2  uncharacterized protein Dmel_CG42588, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_648604.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VU16
      Conserved Domains (2) summary
      PHA03247
      Location:11 → 541
      PHA03247; large tegument protein UL36; Provisional
      sd00039
      Location:2363 → 2403
      7WD40; WD40 repeat [structural motif]
    2. NM_001202159.2 → NP_001189088.1  uncharacterized protein Dmel_CG42588, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001189088.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9MSL0
      Conserved Domains (2) summary
      pfam05793
      Location:825 → 1083
      TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
      sd00039
      Location:2338 → 2378
      7WD40; WD40 repeat [structural motif]
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