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    Cpr56F Cuticular protein 56F [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 37299, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Cpr56Fprovided by FlyBase
    Official Full Name
    Cuticular protein 56Fprovided by FlyBase
    Primary source
    FLYBASE:FBgn0034499
    Locus tag
    Dmel_CG9036
    See related
    AllianceGenome:FB:FBgn0034499
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG9036; DmelCpr56F; Dmel\CG9036
    Summary
    Predicted to be a structural constituent of chitin-based larval cuticle. Predicted to be involved in chitin-based cuticle development. Predicted to be located in chitin-based extracellular matrix. Predicted to be active in extracellular matrix. Is expressed in several structures, including adult head; embryonic epipharynx; embryonic hypopharynx; embryonic/larval posterior spiracle; and gut section. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See Cpr56F in Genome Data Viewer
    Location:
    56F16-56F16; 2-90 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (20288371..20291945, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (16175876..16179450, complement)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Casein kinase II beta2 subunit Neighboring gene long non-coding RNA:CR44638 Neighboring gene long non-coding RNA:CR44639

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Tentative identification of a resilin gene in Drosophila melanogaster. Ardell DH, et al. Insect Biochem Mol Biol, 2001 Sep. PMID 11483432
    2. Resilin matrix distribution, variability and function in Drosophila. Lerch S, et al. BMC Biol, 2020 Dec 14. PMID 33317537, Free PMC Article
    3. The conserved microRNA miR-8 tunes atrophin levels to prevent neurodegeneration in Drosophila. Karres JS, et al. Cell, 2007 Oct 5. PMID 17923093
    4. Fine-mapping nicotine resistance loci in Drosophila using a multiparent advanced generation inter-cross population. Marriage TN, et al. Genetics, 2014 Sep. PMID 25236448, Free PMC Article
    5. Alternative splicing of NURF301 generates distinct NURF chromatin remodeling complexes with altered modified histone binding specificities. Kwon SY, et al. PLoS Genet, 2009 Jul. PMID 19629165, Free PMC Article

    See all (36) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables structural constituent of chitin-based larval cuticle ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chitin-based cuticle development ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chitin-based extracellular matrix ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    is_active_in extracellular matrix IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    cuticular protein 56F
    Names
    CG9036-PA
    Cpr56F-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      20288371..20291945 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_137626.3 → NP_611470.1  cuticular protein 56F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_611470.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7JZJ3
      Related
      FBpp0085613
      Conserved Domains (1) summary
      pfam00379
      Location:128 → 179
      Chitin_bind_4; Insect cuticle protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7JZJ3 Q7JZJ3

    Gene LinkOut

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