U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CG5565 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 33323, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CG5565provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0031335
    Locus tag
    Dmel_CG5565
    See related
    AllianceGenome:FB:FBgn0031335
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    28557659; Dmel\CG5565
    Summary
    Predicted to enable pseudouridine 5'-phosphatase activity. Is expressed in spermatozoon. Orthologous to human PUDP (pseudouridine 5'-phosphatase). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CG5565 in Genome Data Viewer
    Location:
    22A1-22A1; 2-3 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (1354911..1355924, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (1354911..1355924, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Neural Lazarillo

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Widespread adaptive evolution of Drosophila genes with sex-biased expression. Pröschel M, et al. Genetics, 2006 Oct. PMID 16951084, Free PMC Article
    2. Host genetic determinants of microbiota-dependent nutrition revealed by genome-wide analysis of Drosophila melanogaster. Dobson AJ, et al. Nat Commun, 2015 Feb 18. PMID 25692519, Free PMC Article
    3. Evidence for large domains of similarly expressed genes in the Drosophila genome. Spellman PT, et al. J Biol, 2002. PMID 12144710, Free PMC Article
    4. No accelerated rate of protein evolution in male-biased Drosophila pseudoobscura genes. Metta M, et al. Genetics, 2006 Sep. PMID 16816428, Free PMC Article
    5. The B-type lamin is required for somatic repression of testis-specific gene clusters. Shevelyov YY, et al. Proc Natl Acad Sci U S A, 2009 Mar 3. PMID 19218438, Free PMC Article

    See all (28) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables phosphatase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables pseudouridine 5'-phosphatase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein
    Names
    CG5565-PA
    NP_608598.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      1354911..1355924 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_134754.3 → NP_608598.1  uncharacterized protein Dmel_CG5565 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_608598.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0AMI6, A0AMI7, A0AMI8, A0AMI9, C0MI28, Q9VQ04
      Related
      FBpp0077609
      Conserved Domains (2) summary
      TIGR01509
      Location:12 → 198
      HAD-SF-IA-v3; haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
      cl21460
      Location:18 → 231
      HAD_like; Haloacid Dehalogenase-like Hydrolases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VQ04 Q9VQ04

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools