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    Pleckstrin homology (PH) domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817557, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pleckstrin homology (PH) domain superfamily protein
    Primary source
    TAIR:AT2G30060
    Locus tag
    AT2G30060
    See related
    Araport:AT2G30060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T27E13.20; T27E13_20
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (12826804..12828987)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase 14 Neighboring gene transducin family protein / WD-40 repeat family protein Neighboring gene potassium transporter 1 Neighboring gene ZIP metal ion transporter family Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of proteins that interact with the GTP-bound form of the regulatory GTPase Ran in Arabidopsis. Haizel T, et al. Plant J, 1997 Jan. PMID 9025305
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_128561.5

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in nucleocytoplasmic transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in peroxisome HDA PubMed 

    General protein information

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    Preferred Names
    Pleckstrin homology (PH) domain superfamily protein
    NP_180567.1
    • Pleckstrin homology (PH) domain superfamily protein; FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: intracellular transport, protein import into nucleus, translocation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993); BEST Arabidopsis thaliana protein match is: Pleckstrin homology (PH) domain superfamily protein (TAIR:AT1G07140.1); Has 1493 Blast hits to 1181 proteins in 240 species: Archae - 0; Bacteria - 5; Metazoa - 818; Fungi - 349; Plants - 153; Viruses - 2; Other Eukaryotes - 166 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12826804..12828987
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128561.5 → NP_180567.1  Pleckstrin homology (PH) domain superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180567.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04150, O64739, Q2HIH4, Q8RWG8
      UniProtKB/TrEMBL
      A0A178VR56, A0A5S9X2G5, A0A654F2H6
      Conserved Domains (1) summary
      cd13179
      Location:27 → 157
      RanBD_RanBP1; Ran-binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RWG8.2

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