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    PERK12 Protein kinase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838963, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PERK12
    Official Full Name
    Protein kinase superfamily protein
    Primary source
    TAIR:AT1G23540
    Locus tag
    AT1G23540
    See related
    Araport:AT1G23540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtPERK12; F28C11.17; IGI1; INFLORESCENCE GROWTH INHIBITOR 1; proline-rich extensin like receptor kinase; proline-rich extensin-like receptor kinase 12
    Summary
    Encodes a member of the PERK family of putative receptor kinases. Overexpression leads to morphological defects and reduced fertility and increased expression of MAX genes.
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    Genomic context

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    See PERK12 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (8346827..8350068, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF220) Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene OBP32pep, putative (DUF220) Neighboring gene hypothetical protein (DUF220)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proline-rich extensin-like receptor kinases PERK5 and PERK12 are involved in pollen tube growth. Borassi C, et al. FEBS Lett, 2021 Oct. PMID 34427925
    2. Over-expression of the IGI1 leading to altered shoot-branching development related to MAX pathway in Arabidopsis. Hwang I, et al. Plant Mol Biol, 2010 Aug. PMID 20473553, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001332608.1
    NM_102203.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within developmental process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in pollen tube IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Protein kinase superfamily protein
    NP_173768.2
    • INFLORESCENCE GROWTH INHIBITOR 1 (IGI1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: developmental process; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, flower, anther, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: root hair specific 10 (TAIR:AT1G70460.1); Has 385447 Blast hits to 227080 proteins in 6289 species: Archae - 678; Bacteria - 66210; Metazoa - 145576; Fungi - 56663; Plants - 56890; Viruses - 7200; Other Eukaryotes - 52230 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8346827..8350068 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102203.3 → NP_173768.2  Protein kinase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173768.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LQC5, Q9ZUE0
      UniProtKB/TrEMBL
      A0A178W328, A0A5S9VNL5
      Conserved Domains (1) summary
      cd14066
      Location:377 → 645
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    2. NM_001332608.1 → NP_001320243.1  Protein kinase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AM77
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZUE0.2

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