U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    dicer-like protein (DUF936) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838990, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    dicer-like protein (DUF936)
    Primary source
    TAIR:AT1G23790
    Locus tag
    AT1G23790
    See related
    Araport:AT1G23790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5O8.34; F5O8_34
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (8409945..8412079)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box family protein Neighboring gene F-box family protein Neighboring gene aldehyde dehydrogenase 2B7 Neighboring gene Paired amphipathic helix (PAH2) superfamily protein Neighboring gene ncRNA Neighboring gene spermidine synthase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Identification and characterization of the land-plant-specific microtubule nucleation factor MACET4. Schmidt S, et al. J Cell Sci, 2019 Jun 5. PMID 31076517
    2. A Novel Katanin-Tethering Machinery Accelerates Cytokinesis. Sasaki T, et al. Curr Biol, 2019 Dec 2. PMID 31735673
    3. The microtubule-nucleating factor MACERATOR tethers AUGMIN7 to microtubules and governs phragmoplast architecture. Schmidt-Marcec S, et al. Plant Cell, 2024 Mar 29. PMID 38079222, Free PMC Article
    4. CORTICAL MICROTUBULE DISORDERING1 Is Required for Secondary Cell Wall Patterning in Xylem Vessels. Sasaki T, et al. Plant Cell, 2017 Dec. PMID 29133465, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The microtubule-nucleating factor MACERATOR tethers AUGMIN7 to microtubules and governs phragmoplast architecture.
      Title: The microtubule-nucleating factor MACERATOR tethers AUGMIN7 to microtubules and governs phragmoplast architecture.
    2. A Novel Katanin-Tethering Machinery Accelerates Cytokinesis.
      Title: A Novel Katanin-Tethering Machinery Accelerates Cytokinesis.
    3. MACET4 is expressed during cell division and accumulates at the microtubule nucleation regions of the plant-specific cytokinetic microtubule array, the phragmoplast. The direct activity of MACET4 is in promoting microtubule nucleation.
      Title: Identification and characterization of the land-plant-specific microtubule nucleation factor MACET4.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help
    NM_102227.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables gamma-tubulin binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables microtubule binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables molecular adaptor activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule nucleation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with microtubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    dicer-like protein (DUF936)
    NP_173791.2
    • Plant protein of unknown function (DUF936); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF936, plant (InterPro:IPR010341); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF936) (TAIR:AT1G70340.1); Has 265 Blast hits to 216 proteins in 30 species: Archae - 0; Bacteria - 7; Metazoa - 9; Fungi - 7; Plants - 237; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8409945..8412079
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102227.4 → NP_173791.2  dicer-like protein (DUF936) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173791.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W8R5, A0A5S9VPS1, Q9ZUB7
      Conserved Domains (1) summary
      pfam06075
      Location:4 → 489
      DUF936; Plant protein of unknown function (DUF936)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools