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    Galactose oxidase/kelch repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816706, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Galactose oxidase/kelch repeat superfamily protein
    Primary source
    TAIR:AT2G21680
    Locus tag
    AT2G21680
    See related
    Araport:AT2G21680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2G1.5; F2G1_5
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (9267730..9269019)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene cold, circadian rhythm, and rna binding 2 Neighboring gene tRNA-Leu Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene tRNA-Gln

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Galactose oxidase/kelch repeat superfamily protein
    NP_179761.4
    • Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT2G29810.1); Has 2125 Blast hits to 1978 proteins in 129 species: Archae - 2; Bacteria - 88; Metazoa - 967; Fungi - 0; Plants - 1004; Viruses - 10; Other Eukaryotes - 54 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9267730..9269019
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127739.4 → NP_179761.4  Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179761.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IHL1, Q9SIJ3
      UniProtKB/TrEMBL
      A0A178VXQ6, A0A654EW39
      Conserved Domains (4) summary
      PHA03098
      Location:85 → 339
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:135 → 207
      Kelch; KELCH repeat [structural motif]
      pfam00646
      Location:42 → 76
      F-box; F-box domain
      pfam01344
      Location:210 → 251
      Kelch_1; Kelch motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SIJ3.2

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