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    RER1B endoplasmatic reticulum retrieval protein 1B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816698, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RER1B
    Official Full Name
    endoplasmatic reticulum retrieval protein 1B
    Primary source
    TAIR:AT2G21600
    Locus tag
    AT2G21600
    See related
    Araport:AT2G21600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRER1B; endoplasmatic reticulum retrieval protein 1B; F2G1.13; F2G1_13
    Summary
    Key player of retrieval of ER membrane proteins
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    Genomic context

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    See RER1B in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (9242782..9244945)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Ribosomal protein S25 family protein Neighboring gene Glucose-1-phosphate adenylyltransferase family protein Neighboring gene uncharacterized protein Neighboring gene pectinesterase 11 Neighboring gene Adenine nucleotide alpha hydrolases-like superfamily protein Neighboring gene Sec23/Sec24 protein transport family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A dominant negative mutant of sar1 GTPase inhibits protein transport from the endoplasmic reticulum to the Golgi apparatus in tobacco and Arabidopsis cultured cells. Takeuchi M, et al. Plant J, 2000 Aug. PMID 10972878
    2. The Arabidopsis thaliana RER1 gene family: its potential role in the endoplasmic reticulum localization of membrane proteins. Sato K, et al. Plant Mol Biol, 1999 Dec. PMID 10737146
    3. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    4. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
    5. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_127731.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cis-Golgi network TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in endoplasmic reticulum HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    endoplasmatic reticulum retrieval protein 1B
    NP_179754.1
    • endoplasmatic reticulum retrieval protein 1B (RER1B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: retrograde vesicle-mediated transport, Golgi to ER; LOCATED IN: Golgi apparatus, endoplasmic reticulum, cis-Golgi network; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Retrieval of early ER protein Rer1 (InterPro:IPR004932); BEST Arabidopsis thaliana protein match is: Rer1 family protein (TAIR:AT4G39220.1); Has 516 Blast hits to 512 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 154; Fungi - 152; Plants - 129; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9242782..9244945
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127731.3 → NP_179754.1  endoplasmatic reticulum retrieval protein 1B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179754.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O48671, Q541D3, Q9SIK0
      UniProtKB/TrEMBL
      A0A178VYZ6, A0A5S9X0C0
      Conserved Domains (1) summary
      pfam03248
      Location:19 → 180
      Rer1; Rer1 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O48671.2

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