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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838218, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT1G16480
    Locus tag
    AT1G16480
    See related
    Araport:AT1G16480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3O9.28; F3O9_28
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (5625699..5629013, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene rhodanese homologue 2 Neighboring gene proteasome subunit PAB1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene myb domain protein 58 Neighboring gene filamentous hemagglutinin transporter

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_101513.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_001185013.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1).
    NP_173097.2
    • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 59612 Blast hits to 13645 proteins in 226 species: Archae - 0; Bacteria - 4; Metazoa - 112; Fungi - 34; Plants - 58832; Viruses - 0; Other Eukaryotes - 630 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5625699..5629013 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198084.1 → NP_001185013.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185013.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W9E0, F4I4G0
      Conserved Domains (6) summary
      PLN03077
      Location:122 → 913
      PLN03077; Protein ECB2; Provisional
      TIGR00756
      Location:616 → 647
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:616 → 643
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:109 → 139
      PPR; PPR repeat
      pfam13041
      Location:5 → 53
      PPR_2; PPR repeat family
      pfam14432
      Location:788 → 910
      DYW_deaminase; DYW family of nucleic acid deaminases

    2. NM_101513.4 → NP_173097.2  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173097.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W9E0, F4I4G1
      Conserved Domains (6) summary
      PLN03077
      Location:139 → 935
      PLN03077; Protein ECB2; Provisional
      TIGR00756
      Location:633 → 664
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:633 → 660
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:126 → 156
      PPR; PPR repeat
      pfam13041
      Location:22 → 70
      PPR_2; PPR repeat family
      pfam14432
      Location:805 → 927
      DYW_deaminase; DYW family of nucleic acid deaminases
    Nucleotide Protein
    Heading Accession and Version

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