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    ATA27 Glycosyl hydrolase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843927, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATA27
    Official Full Name
    Glycosyl hydrolase superfamily protein
    Primary source
    TAIR:AT1G75940
    Locus tag
    AT1G75940
    See related
    Araport:AT1G75940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    BETA GLUCOSIDASE 20; BGLU20; T4O12.15; T4O12_15
    Summary
    encodes a protein similar to the BGL4 beta-glucosidase from Brassica napus. The ATA27 protein is predicted to have an ER retention signal and an acidic isoelectric point, suggesting that it may be localized to the ER lumen.
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    Genomic context

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    See ATA27 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Sequence:
    Chromosome: 1; NC_003070.9 (28511142..28514284)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene extracellular lipase 6 Neighboring gene uncharacterized protein Neighboring gene S phase kinase-associated protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification, sequence analysis and expression studies of novel anther-specific genes of Arabidopsis thaliana. Rubinelli P, et al. Plant Mol Biol, 1998 Jul. PMID 9687065
    2. bHLH05 is an interaction partner of MYB51 and a novel regulator of glucosinolate biosynthesis in Arabidopsis. Frerigmann H, et al. Plant Physiol, 2014 Sep. PMID 25049362, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_106244.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables beta-glucosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum lumen ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Glycosyl hydrolase superfamily protein
    NP_177722.1
    • ATA27; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endoplasmic reticulum lumen, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 19 (TAIR:AT3G21370.1); Has 11431 Blast hits to 11011 proteins in 1475 species: Archae - 142; Bacteria - 7924; Metazoa - 708; Fungi - 203; Plants - 1456; Viruses - 0; Other Eukaryotes - 998 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28511142..28514284
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106244.3 → NP_177722.1  Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177722.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49117, Q84WV2, Q8VXW3, Q9LQS3
      UniProtKB/TrEMBL
      A0A178WJ10, A0A5S9WUQ4
      Conserved Domains (1) summary
      cl23725
      Location:39 → 516
      Glyco_hydro_1; Glycosyl hydrolase family 1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84WV2.1

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