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    translation initiation factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841042, updated on 18-Sep-2024

    Summary

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    Official Full Name
    translation initiation factor
    Primary source
    TAIR:AT1G44780
    Locus tag
    AT1G44780
    See related
    Araport:AT1G44780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T12C22.5; T12C22_5
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (16909708..16912270)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Adenine nucleotide alpha hydrolases-like superfamily protein Neighboring gene elongation factor Neighboring gene ChaC-like family protein Neighboring gene nodulin MtN21 /EamA-like transporter family protein Neighboring gene DNA-binding storekeeper protein-related transcriptional regulator

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Histone chaperones AtChz1A and AtChz1B are required for H2A.Z deposition and interact with the SWR1 chromatin-remodeling complex in Arabidopsis thaliana. Wu J, et al. New Phytol, 2023 Jul. PMID 37129076
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Histone chaperones AtChz1A and AtChz1B are required for H2A.Z deposition and interact with the SWR1 chromatin-remodeling complex in Arabidopsis thaliana.
      Title: Histone chaperones AtChz1A and AtChz1B are required for H2A.Z deposition and interact with the SWR1 chromatin-remodeling complex in Arabidopsis thaliana.
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    General gene information

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    NM_001036071.1
    NM_103559.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    translation initiation factor
    NP_001031148.1
    • INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Histone chaperone domain CHZ (InterPro:IPR019098); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_175099.2
    • CONTAINS InterPro DOMAIN/s: Histone chaperone domain CHZ (InterPro:IPR019098); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08310.1); Has 18105 Blast hits to 11200 proteins in 808 species: Archae - 37; Bacteria - 1195; Metazoa - 7724; Fungi - 1727; Plants - 674; Viruses - 183; Other Eukaryotes - 6565 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      16909708..16912270
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103559.2 → NP_175099.2  translation initiation factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175099.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W981, Q5Q0F0
      Conserved Domains (2) summary
      smart01082
      Location:380 → 415
      CHZ; Histone chaperone domain CHZ
      cl21519
      Location:122 → 196
      Cas8a1_I-A; CRISPR/Cas system-associated protein Cas8a1

    2. NM_001036071.1 → NP_001031148.1  translation initiation factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031148.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W981, Q5Q0E8
      Conserved Domains (2) summary
      smart01082
      Location:379 → 414
      CHZ; Histone chaperone domain CHZ
      cl21519
      Location:122 → 196
      Cas8a1_I-A; CRISPR/Cas system-associated protein Cas8a1
    Nucleotide Protein
    Heading Accession and Version

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