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    nuclear localized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841279, updated on 18-Sep-2024

    Summary

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    Official Full Name
    nuclear localized protein
    Primary source
    TAIR:AT1G48580
    Locus tag
    AT1G48580
    See related
    Araport:AT1G48580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1N15.20; T1N15_20
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (17957942..17960916, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Outer arm dynein light chain 1 protein Neighboring gene Vacuolar protein sorting-associated protein 26 Neighboring gene uncharacterized protein Neighboring gene zinc finger (Ran-binding) family protein Neighboring gene ncRNA Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_103754.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in recombinational repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nuclear localized protein
    NP_175291.1
    • unknown protein; Has 91 Blast hits to 91 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17957942..17960916 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333343.1 → NP_001320642.1  nuclear localized protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEZ6, A0A1P8ANI6, A0A384KLI7, A0A5S9WKK4
      Conserved Domains (1) summary
      pfam15072
      Location:170 → 256
      DUF4539; Domain of unknown function (DUF4539)

    2. NM_001333344.1 → NP_001320641.1  nuclear localized protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEZ6, A0A1P8ANI6, A0A384KLI7, A0A5S9WKK4
      Conserved Domains (1) summary
      pfam15072
      Location:170 → 256
      DUF4539; Domain of unknown function (DUF4539)

    3. NM_103754.2 → NP_175291.1  nuclear localized protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175291.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WKK4, F4HYI1
      Conserved Domains (1) summary
      pfam15072
      Location:167 → 253
      DUF4539; Domain of unknown function (DUF4539)
    Nucleotide Protein
    Heading Accession and Version

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