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    Zinc finger C-x8-C-x5-C-x3-H type family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838759, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Zinc finger C-x8-C-x5-C-x3-H type family protein
    Primary source
    TAIR:AT1G21580
    Locus tag
    AT1G21580
    See related
    Araport:AT1G21580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24J8.17; F24J8_17
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (7557140..7565914, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Calcium-binding EF-hand family protein Neighboring gene uncharacterized protein Neighboring gene kinase with adenine nucleotide alpha hydrolases-like domain-containing protein Neighboring gene plastid transcriptionally active 6 Neighboring gene wound-responsive family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis. Hématy K, et al. PLoS Genet, 2016 Feb. PMID 26828932, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SOP1 is a new component of nuclear RNA surveillance that is required for the degradation of a specific subset of nuclear exosome targets.[SOP1]
      Title: The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001332512.1
    NM_001332513.1
    NM_001332514.1
    NM_001332515.1
    NM_001332516.1
    NM_001332517.1
    NM_001332518.1
    NM_001332519.1
    NM_102007.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of post-transcriptional gene silencing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of RNA splicing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear speck IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Zinc finger C-x8-C-x5-C-x3-H type family protein
    NP_173577.2
    • Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 6412 Blast hits to 4180 proteins in 441 species: Archae - 2; Bacteria - 615; Metazoa - 1993; Fungi - 936; Plants - 1540; Viruses - 149; Other Eukaryotes - 1177 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      7557140..7565914 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102007.4 → NP_173577.2  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173577.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EDE7
      Conserved Domains (1) summary
      pfam15663
      Location:1942 → 2018
      zf-CCCH_3; Zinc-finger containing family

    2. NM_001332514.1 → NP_001322598.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN01, A0A1P8AUF2

    3. NM_001332513.1 → NP_001322597.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN01, A0A1P8AUH4

    4. NM_001332512.1 → NP_001322596.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN01, A0A1P8AUH0

    5. NM_001332517.1 → NP_001322601.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN01, A0A1P8AUJ2

    6. NM_001332516.1 → NP_001322600.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN01, A0A1P8AUH4

    7. NM_001332515.1 → NP_001322599.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN01, A0A1P8AUH0

    8. NM_001332518.1 → NP_001322602.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN01, A0A1P8AUJ2

    9. NM_001332519.1 → NP_001322603.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P0C945
      UniProtKB/TrEMBL
      A0A178WN01
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0C945.1

    Gene LinkOut

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