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    HIPP20 Heavy metal transport/detoxification superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843445, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HIPP20
    Official Full Name
    Heavy metal transport/detoxification superfamily protein
    Primary source
    TAIR:AT1G71050
    Locus tag
    AT1G71050
    See related
    Araport:AT1G71050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F23N20.4; F23N20_4; heavy metal associated isoprenylated plant protein 20
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    Genomic context

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    See HIPP20 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (26803097..26804292, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene MYB-like 2 Neighboring gene Cupredoxin superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Metallochaperone-like genes in Arabidopsis thaliana. Tehseen M, et al. Metallomics, 2010 Aug. PMID 21072340
    2. Stress induced and nuclear localized HIPP26 from Arabidopsis thaliana interacts via its heavy metal associated domain with the drought stress related zinc finger transcription factor ATHB29. Barth O, et al. Plant Mol Biol, 2009 Jan. PMID 18974936
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_105774.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in detoxification of cadmium ion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Heavy metal transport/detoxification superfamily protein
    NP_177261.1
    • Heavy metal transport/detoxification superfamily protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G22990.1); Has 1285 Blast hits to 1219 proteins in 68 species: Archae - 2; Bacteria - 24; Metazoa - 2; Fungi - 25; Plants - 1232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26803097..26804292 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105774.4 → NP_177261.1  Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177261.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C9A3
      UniProtKB/TrEMBL
      A0A178W5Y0, A0A5S9WRP3
      Conserved Domains (1) summary
      cd00371
      Location:36 → 90
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C9A3.1

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