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    Leucine-rich repeat family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838143, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Leucine-rich repeat family protein
    Primary source
    TAIR:AT1G15740
    Locus tag
    AT1G15740
    See related
    Araport:AT1G15740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7H2.8; F7H2_8
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    16
    Sequence:
    Chromosome: 1; NC_003070.9 (5410908..5414919)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene TRF-like 5 Neighboring gene Cobalamin biosynthesis CobW-like protein Neighboring gene ncRNA Neighboring gene Transducin family protein / WD-40 repeat family protein Neighboring gene ncRNA Neighboring gene Molecular chaperone Hsp40/DnaJ family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_101442.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Leucine-rich repeat family protein
    NP_563980.2
    • Leucine-rich repeat family protein; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT4G23840.1); Has 38052 Blast hits to 19856 proteins in 856 species: Archae - 6; Bacteria - 8624; Metazoa - 11681; Fungi - 680; Plants - 12072; Viruses - 79; Other Eukaryotes - 4910 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5410908..5414919
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101442.4 → NP_563980.2  Leucine-rich repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563980.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8H1Q4, Q9C5C9
      Conserved Domains (3) summary
      sd00033
      Location:384 → 402
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:164 → 188
      LRR_AMN1; leucine-rich repeat [structural motif]
      NF033189
      Location:139 → 497
      internalin_A; class 1 internalin InlA
    Nucleotide Protein
    Heading Accession and Version

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