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    Got1/Sft2-like vescicle transport protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821059, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Got1/Sft2-like vescicle transport protein family
    Primary source
    TAIR:AT3G03180
    Locus tag
    AT3G03180
    See related
    Araport:AT3G03180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T17B22.13; T17B22_13
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (733253..734662)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene B-cell receptor-associated-like protein Neighboring gene uncharacterized protein Neighboring gene glutathione S-transferase F11 Neighboring gene NAC domain containing protein 45 Neighboring gene Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001337459.1
    NM_001337460.1
    NM_111188.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Got1/Sft2-like vescicle transport protein family
    NP_186968.2
    • Got1/Sft2-like vescicle transport protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport protein, Got1/SFT2-like (InterPro:IPR007305); BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT5G01430.2); Has 449 Blast hits to 449 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 113; Plants - 94; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      733253..734662
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111188.4 → NP_186968.2  Got1/Sft2-like vescicle transport protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186968.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NMM1, Q9M9N7
      UniProtKB/TrEMBL
      A0A178VGP0, A0A5S9X9R9
      Conserved Domains (1) summary
      cl02130
      Location:6 → 118
      Got1; Got1/Sft2-like family

    2. NM_001337459.1 → NP_001327132.1  Got1/Sft2-like vescicle transport protein family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LRD0

    3. NM_001337460.1 → NP_001327133.1  Got1/Sft2-like vescicle transport protein family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LRD1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NMM1.1

    Gene LinkOut

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