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    Translation initiation factor IF2/IF5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819983, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Translation initiation factor IF2/IF5
    Primary source
    TAIR:AT3G07920
    Locus tag
    AT3G07920
    See related
    Araport:AT3G07920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (2524420..2526229, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein Neighboring gene O-fucosyltransferase family protein Neighboring gene reactive oxygen species modulator-like protein Neighboring gene DNA glycosylase superfamily protein Neighboring gene Calcium-dependent ARF-type GTPase activating protein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Translation initiation factor IF2/IF5
    NP_187449.2
    • Translation initiation factor IF2/IF5; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), Translation initiation factor IF2/IF5 (InterPro:IPR002735); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 beta subunit (TAIR:AT5G20920.3); Has 1255 Blast hits to 1254 proteins in 354 species: Archae - 270; Bacteria - 0; Metazoa - 344; Fungi - 249; Plants - 177; Viruses - 2; Other Eukaryotes - 213 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2524420..2526229 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111671.2 → NP_187449.2  Translation initiation factor IF2/IF5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187449.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XAG1, A0A654F6K8, F4JFQ0
      Conserved Domains (1) summary
      smart00653
      Location:38 → 150
      eIF2B_5; domain present in translation initiation factor eIF2B and eIF5
    Nucleotide Protein
    Heading Accession and Version

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