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    VTI13 vesicle transport V-snare 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822557, updated on 18-Sep-2024

    Summary

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    Official Symbol
    VTI13
    Official Full Name
    vesicle transport V-snare 13
    Primary source
    TAIR:AT3G29100
    Locus tag
    AT3G29100
    See related
    Araport:AT3G29100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATVTI13; vesicle transport V-snare 13
    Summary
    Encodes a member of the Arabidopsis v-SNARE (vesicle soluble NSF attachment protein receptor) family that has 3 members: VTI11, VTI12, and VTI13. This gene is not expressed at levels detectable by RT-PCR. However, one EST corresponding to this gene has been isolated.
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    Genomic context

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    See VTI13 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (11075651..11077572, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pectin methylesterase 31 Neighboring gene tRNA-Pro Neighboring gene miscRNA Neighboring gene Terpenoid cyclases/Protein prenyltransferases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SNARE VTI13 plays a unique role in endosomal trafficking pathways associated with the vacuole and is essential for cell wall organization and root hair growth in arabidopsis. Larson ER, et al. Ann Bot, 2014 Oct. PMID 24737717, Free PMC Article
    2. The Arabidopsis genome. An abundance of soluble N-ethylmaleimide-sensitive factor adaptor protein receptors. Sanderfoot AA, et al. Plant Physiol, 2000 Dec. PMID 11115874, Free PMC Article
    3. Identification of ubiquitinated proteins in Arabidopsis. Manzano C, et al. Plant Mol Biol, 2008 Sep. PMID 18535787
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. VTI13 plays a unique role in endosomal trafficking pathways associated with the vacuole within root hairs and is essential for the maintenance of cell wall organization and root hair growth in arabidopsis.
      Title: SNARE VTI13 plays a unique role in endosomal trafficking pathways associated with the vacuole and is essential for cell wall organization and root hair growth in arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203068.2
    NM_001339004.1
    NM_001339005.1
    NM_001339006.1
    NM_113833.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables SNARE binding TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within intra-Golgi vesicle-mediated transport TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within plant-type cell wall organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of protein transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within root hair cell development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in early endosome membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endosome membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vesicle transport V-snare 13
    NP_001189997.1
    • vesicle transport V-snare 13 (VTI13); FUNCTIONS IN: SNARE binding, receptor activity; INVOLVED IN: cellular membrane fusion, intra-Golgi vesicle-mediated transport; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE, N-terminal (InterPro:IPR007705); BEST Arabidopsis thaliana protein match is: Vesicle transport v-SNARE family protein (TAIR:AT5G39510.1).
    NP_189554.2
    • vesicle transport V-snare 13 (VTI13); FUNCTIONS IN: SNARE binding, receptor activity; INVOLVED IN: cellular membrane fusion, intra-Golgi vesicle-mediated transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE, N-terminal (InterPro:IPR007705); BEST Arabidopsis thaliana protein match is: Vesicle transport v-SNARE family protein (TAIR:AT5G39510.1); Has 695 Blast hits to 693 proteins in 200 species: Archae - 2; Bacteria - 0; Metazoa - 259; Fungi - 142; Plants - 163; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      11075651..11077572 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203068.2 → NP_001189997.1  vesicle transport V-snare 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189997.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V5H0
      Conserved Domains (2) summary
      cd15862
      Location:73 → 134
      SNARE_Vti1; SNARE motif of Vti1
      pfam05008
      Location:1 → 36
      V-SNARE; Vesicle transport v-SNARE protein N-terminus

    2. NM_113833.4 → NP_189554.2  vesicle transport V-snare 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189554.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V5H5, A1A6H8
      Conserved Domains (2) summary
      cd15862
      Location:101 → 162
      SNARE_Vti1; SNARE motif of Vti1
      pfam05008
      Location:26 → 64
      V-SNARE; Vesicle transport v-SNARE protein N-terminus

    3. NM_001339004.1 → NP_001327544.1  vesicle transport V-snare 13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LSM6, Q8GXG5, Q9LVP9
      UniProtKB/TrEMBL
      A0A654FD37, A0A7G2ETL3
      Conserved Domains (2) summary
      cd15862
      Location:127 → 188
      SNARE_Vti1; SNARE motif of Vti1
      pfam05008
      Location:12 → 90
      V-SNARE; Vesicle transport v-SNARE protein N-terminus

    4. NM_001339005.1 → NP_001327542.1  vesicle transport V-snare 13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V5H0
      Conserved Domains (2) summary
      cd15862
      Location:73 → 134
      SNARE_Vti1; SNARE motif of Vti1
      pfam05008
      Location:1 → 36
      V-SNARE; Vesicle transport v-SNARE protein N-terminus

    5. NM_001339006.1 → NP_001327543.1  vesicle transport V-snare 13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V5H0
      Conserved Domains (2) summary
      cd15862
      Location:73 → 134
      SNARE_Vti1; SNARE motif of Vti1
      pfam05008
      Location:1 → 36
      V-SNARE; Vesicle transport v-SNARE protein N-terminus
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LVP9.1

    Gene LinkOut

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