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    DNAse I-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821380, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNAse I-like superfamily protein
    Primary source
    TAIR:AT3G18500
    Locus tag
    AT3G18500
    See related
    Araport:AT3G18500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    13
    Sequence:
    Chromosome: 3; NC_003074.8 (6352447..6355463)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene ATP-dependent helicase/nuclease subunit Neighboring gene ROTUNDIFOLIA like 20

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of Arabidopsis CCR4-NOT Complexes with Pumilio RNA-Binding Proteins, APUM5 and APUM2. Arae T, et al. Plant Cell Physiol, 2019 Sep 1. PMID 31093672
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084709.1
    NM_112735.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables poly(A)-specific ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNAse I-like superfamily protein
    NP_001078178.1
    • DNAse I-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G73875.1); Has 1375 Blast hits to 1335 proteins in 238 species: Archae - 0; Bacteria - 71; Metazoa - 526; Fungi - 233; Plants - 309; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).
    NP_001189925.1
    • DNAse I-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G73875.1).
    NP_188479.3
    • DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G73875.1); Has 1180 Blast hits to 1142 proteins in 213 species: Archae - 0; Bacteria - 8; Metazoa - 512; Fungi - 213; Plants - 283; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6352447..6355463
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338338.1 → NP_001326135.1  DNAse I-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V9B6, A0A1I9LNC7
      Conserved Domains (1) summary
      cl00490
      Location:111 → 441
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    2. NM_001202996.2 → NP_001189925.1  DNAse I-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189925.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XDC7, F4J8R6
      Conserved Domains (1) summary
      cl00490
      Location:111 → 445
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    3. NM_001084709.1 → NP_001078178.1  DNAse I-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078178.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MSA8, Q8RWF7, Q9LS39
      UniProtKB/TrEMBL
      A0A5S9XDC7, A0A654F9G2
      Conserved Domains (1) summary
      cl00490
      Location:111 → 444
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    4. NM_112735.4 → NP_188479.3  DNAse I-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188479.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XDC7
      Conserved Domains (1) summary
      cl00490
      Location:111 → 422
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LS39.2

    Gene LinkOut

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