U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Terpenoid cyclases/Protein prenyltransferases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822173, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Terpenoid cyclases/Protein prenyltransferases superfamily protein
    Primary source
    TAIR:AT3G25810
    Locus tag
    AT3G25810
    See related
    Araport:AT3G25810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (9430762..9434000)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene protein phosphatase 2A subunit A2 Neighboring gene uncharacterized protein Neighboring gene pseudo Neighboring gene terpene synthase-like sequence-1,8-cineole

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Biosynthesis and emission of terpenoid volatiles from Arabidopsis flowers. Chen F, et al. Plant Cell, 2003 Feb. PMID 12566586, Free PMC Article
    2. Proteomic profiling of tandem affinity purified 14-3-3 protein complexes in Arabidopsis thaliana. Chang IF, et al. Proteomics, 2009 Jun. PMID 19452453, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_113482.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables (4S)-limonene synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables (E)-beta-ocimene synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables (R)-limonene synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables myrcene synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables pinene synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sabinene synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables sesquiterpene synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in diterpenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within monoterpene biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Terpenoid cyclases/Protein prenyltransferases superfamily protein
    NP_189209.2
    • Terpenoid cyclases/Protein prenyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase-like sequence-1,8-cineole (TAIR:AT3G25820.1); Has 1745 Blast hits to 1713 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1740; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9430762..9434000
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113482.5 → NP_189209.2  Terpenoid cyclases/Protein prenyltransferases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189209.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B7ZWS1, Q84UV1, Q9LRZ6
      UniProtKB/TrEMBL
      A0A178VMB9, A0A5S9XFM4
      Conserved Domains (1) summary
      cd00684
      Location:47 → 594
      Terpene_cyclase_plant_C1; Plant Terpene Cyclases, Class 1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LRZ6.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools