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    CHR40 chromatin remodeling 40 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822023, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CHR40
    Official Full Name
    chromatin remodeling 40
    Primary source
    TAIR:AT3G24340
    Locus tag
    AT3G24340
    See related
    Araport:AT3G24340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    chromatin remodeling 40
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    Genomic context

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    See CHR40 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (8831935..8835829, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene MUTL protein homolog 1 Neighboring gene O-Glycosyl hydrolases family 17 protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene syntaxin of plants 32 Neighboring gene ATP-dependent caseinolytic (Clp) protease/crotonase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Locus-specific control of the de novo DNA methylation pathway in Arabidopsis by the CLASSY family. Zhou M, et al. Nat Genet, 2018 Jun. PMID 29736015, Free PMC Article
    2. SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV. Law JA, et al. PLoS Genet, 2011 Jul. PMID 21811420, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_113341.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in gene silencing by siRNA-directed DNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within siRNA transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    chromatin remodeling 40
    NP_189077.1
    • chromatin remodeling 40 (chr40); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 31 (TAIR:AT1G05490.1); Has 24041 Blast hits to 18768 proteins in 2163 species: Archae - 181; Bacteria - 8994; Metazoa - 4892; Fungi - 4248; Plants - 1616; Viruses - 198; Other Eukaryotes - 3912 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8831935..8835829 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113341.2 → NP_189077.1  chromatin remodeling 40 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189077.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LK10
      UniProtKB/TrEMBL
      A0A178VJH7, A0A5S9XGT5
      Conserved Domains (2) summary
      cd18793
      Location:928 → 1057
      SF2_C_SNF; C-terminal helicase domain of the SNF family helicases
      cd18007
      Location:577 → 830
      DEXHc_ATRX-like; DEXH-box helicase domain of ATRX-like proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LK10.1

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