Translation initiation factor IF2/IF5 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Translation initiation factor IF2/IF5
Primary source: TAIR:AT1G36730
Locus tag: AT1G36730
See related: Araport:AT1G36730
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T15P17.7; T15P17_7
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 2

Sequence:: Chromosome: 1; NC_003070.9 (13898210..13900831, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

At1g36730_Arabidopsis_lyrata_ssp._lyrata_CAN1 (e-PCR)
- UniSTS:510267

At1g36730_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)
- UniSTS:510267

Homology

Orthologs from OrthoDB

Miscellaneous features

Loc: c13900232-13900059 AT1G36730.uORF1

NM_103340.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Process	Evidence Code	Pubs
involved_in response to water deprivation	IEP Inferred from Expression Pattern more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Translation initiation factor IF2/IF5

NP_174877.1

Translation initiation factor IF2/IF5; FUNCTIONS IN: binding, translation initiation factor activity; INVOLVED IN: translational initiation, regulation of translational initiation; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Translation initiation factor IF2/IF5 (InterPro:IPR002735), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Translation initiation factor IF2/IF5 (TAIR:AT1G77840.1); Has 6371 Blast hits to 4946 proteins in 714 species: Archae - 245; Bacteria - 804; Metazoa - 2020; Fungi - 758; Plants - 416; Viruses - 40; Other Eukaryotes - 2088 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

13898210..13900831 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_103340.3 → NP_174877.1 Translation initiation factor IF2/IF5 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_174877.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q93ZX3, Q9C8F1

UniProtKB/TrEMBL

A0A178W594, A0A5S9WJD9

Conserved Domains (2) summary

cd11561
Location:286 → 437

W2_eIF5; C-terminal W2 domain of eukaryotic translation initiation factor 5

smart00653
Location:15 → 128

eIF2B_5; domain present in translation initiation factor eIF2B and eIF5