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    3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838397, updated on 18-Sep-2024

    Summary

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    Official Full Name
    3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295)
    Primary source
    TAIR:AT1G18180
    Locus tag
    AT1G18180
    See related
    Araport:AT1G18180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T10F20.18
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (6255736..6257900)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene FKBP-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene golgin Putative 2 Neighboring gene miscRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2004 Jul. PMID 15060130
    2. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
    3. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_101678.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295)
    NP_173256.2
    • FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104), Protein of unknown function DUF1295 (InterPro:IPR010721); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1295) (TAIR:AT1G73650.3); Has 2065 Blast hits to 2065 proteins in 348 species: Archae - 0; Bacteria - 501; Metazoa - 79; Fungi - 152; Plants - 110; Viruses - 0; Other Eukaryotes - 1223 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6255736..6257900
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332335.1 → NP_001320322.1  3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WQ53, A0A1P8AMH3

    2. NM_101678.3 → NP_173256.2  3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173256.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ELN4, F4IAN4
      Conserved Domains (1) summary
      pfam06966
      Location:24 → 252
      DUF1295; Protein of unknown function (DUF1295)
    Nucleotide Protein
    Heading Accession and Version

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