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    BGAL12 beta-galactosidase 12 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828720, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BGAL12
    Official Full Name
    beta-galactosidase 12
    Primary source
    TAIR:AT4G26140
    Locus tag
    AT4G26140
    See related
    Araport:AT4G26140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    beta-galactosidase 12; F20B18.250; F20B18_250
    Summary
    putative beta-galactosidase
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    Genomic context

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    See BGAL12 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    16
    Sequence:
    Chromosome: 4; NC_003075.7 (13242968..13248213, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Ankyrin repeat family protein / BTB/POZ domain-containing protein Neighboring gene cotton fiber protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative characterization of the Arabidopsis subfamily a1 beta-galactosidases. Gantulga D, et al. Phytochemistry, 2009 Dec. PMID 19767039
    2. Subcellular location of Arabidopsis thaliana subfamily a1 β-galactosidases and developmental regulation of transcript levels of their coding genes. Moneo-Sánchez M, et al. Plant Physiol Biochem, 2016 Dec. PMID 27676245
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001341777.1
    NM_001341778.1
    NM_001341779.1
    NM_001341780.1
    NM_001341781.1
    NM_001341782.1
    NM_001341783.1
    NM_118747.3
    NM_179222.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables beta-galactosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-galactosidase 12
    NP_194344.2
    • beta-galactosidase 12 (BGAL12); FUNCTIONS IN: cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 2 (TAIR:AT3G52840.1); Has 2056 Blast hits to 2037 proteins in 472 species: Archae - 15; Bacteria - 846; Metazoa - 355; Fungi - 209; Plants - 564; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
    NP_849553.1
    • beta-galactosidase 12 (BGAL12); FUNCTIONS IN: cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 2 (TAIR:AT3G52840.1); Has 2223 Blast hits to 2064 proteins in 473 species: Archae - 15; Bacteria - 965; Metazoa - 380; Fungi - 213; Plants - 581; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13242968..13248213 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118747.3 → NP_194344.2  beta-galactosidase 12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194344.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XVZ1
      Conserved Domains (2) summary
      PLN03059
      Location:11 → 621
      PLN03059; beta-galactosidase; Provisional
      pfam01301
      Location:37 → 338
      Glyco_hydro_35; Glycosyl hydrolases family 35

    2. NM_001341777.1 → NP_001329560.1  beta-galactosidase 12 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XVZ1

    3. NM_179222.2 → NP_849553.1  beta-galactosidase 12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849553.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LPL0, Q9SCV0, Q9SZI5
      UniProtKB/TrEMBL
      A0A5S9XVZ1, A0A654FSX5
      Conserved Domains (1) summary
      PLN03059
      Location:11 → 726
      PLN03059; beta-galactosidase; Provisional

    4. NM_001341780.1 → NP_001329558.1  beta-galactosidase 12 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B834, A0A5S9XVZ1

    5. NM_001341781.1 → NP_001329559.1  beta-galactosidase 12 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B849, A0A5S9XVZ1

    6. NM_001341779.1 → NP_001329557.1  beta-galactosidase 12 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7E8, A0A1P8B827

    7. NM_001341778.1 → NP_001329554.1  beta-galactosidase 12 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7E8, A0A1P8B827

    8. NM_001341782.1 → NP_001329555.1  beta-galactosidase 12 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7E8, A0A1P8B828

    9. NM_001341783.1 → NP_001329556.1  beta-galactosidase 12 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B829, A0A5S9XVZ1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SCV0.1

    Gene LinkOut

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