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    Amidase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829640, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Amidase family protein
    Primary source
    TAIR:AT4G34880
    Locus tag
    AT4G34880
    See related
    Araport:AT4G34880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11I11.120; F11I11_120
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (16615391..16617586)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Chalcone and stilbene synthase family protein Neighboring gene Plant neutral invertase family protein Neighboring gene rotamase cyclophilin 5 Neighboring gene uncharacterized protein Neighboring gene xanthine dehydrogenase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional characterization of cis-elements conferring vascular vein expression of At4g34880 amidase family protein gene in Arabidopsis. Wu X, et al. PLoS One, 2013. PMID 23844031, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Cis-elements conferring vascular vein expression of At4g34880 amidase family protein gene in Arabidopsis leaves have been described.
      Title: Functional characterization of cis-elements conferring vascular vein expression of At4g34880 amidase family protein gene in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_119654.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables amidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables indoleacetamide hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Amidase family protein
    NP_195214.1
    • Amidase family protein; FUNCTIONS IN: amidase activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor; INVOLVED IN: acrylonitrile catabolic process, aldoxime metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Amidase (InterPro:IPR000120); BEST Arabidopsis thaliana protein match is: Amidase family protein (TAIR:AT5G07360.2); Has 15395 Blast hits to 15313 proteins in 2409 species: Archae - 237; Bacteria - 9126; Metazoa - 385; Fungi - 509; Plants - 293; Viruses - 0; Other Eukaryotes - 4845 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16615391..16617586
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342309.1 → NP_001329257.1  Amidase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1P8B760, Q9SW47
      UniProtKB/TrEMBL
      A0A178USG4, A0A5S9XYP4, A0A654FVM1
      Conserved Domains (1) summary
      cl18951
      Location:38 → 512
      Amidase

    2. NM_119654.2 → NP_195214.1  Amidase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195214.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178USG4
      Conserved Domains (2) summary
      PRK07488
      Location:42 → 455
      PRK07488; indole acetimide hydrolase; Validated
      cl18951
      Location:38 → 466
      Amidase; Amidase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A1P8B760.1

    Gene LinkOut

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