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    Acetamidase/Formamidase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829910, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Acetamidase/Formamidase family protein
    Primary source
    TAIR:AT4G37550
    Locus tag
    AT4G37550
    See related
    Araport:AT4G37550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19F18.40; F19F18_40
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (17643110..17645830)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Peroxidase superfamily protein Neighboring gene LOB domain-containing protein 39 Neighboring gene Acetamidase/Formamidase family protein Neighboring gene ncRNA Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    2. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    3. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001204016.1
    NM_001342444.1
    NM_001342445.1
    NM_001342446.1
    NM_119919.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables formamidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    Acetamidase/Formamidase family protein
    NP_001031801.1
    • Acetamidase/Formamidase family protein; FUNCTIONS IN: formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetamidase/Formamidase (InterPro:IPR004304); BEST Arabidopsis thaliana protein match is: Acetamidase/Formamidase family protein (TAIR:AT4G37560.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001190945.1
    • Acetamidase/Formamidase family protein; FUNCTIONS IN: formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetamidase/Formamidase (InterPro:IPR004304); BEST Arabidopsis thaliana protein match is: Acetamidase/Formamidase family protein (TAIR:AT4G37560.1).
    NP_568028.1
    • Acetamidase/Formamidase family protein; FUNCTIONS IN: formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetamidase/Formamidase (InterPro:IPR004304); BEST Arabidopsis thaliana protein match is: Acetamidase/Formamidase family protein (TAIR:AT4G37560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17643110..17645830
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036724.4 → NP_001031801.1  Acetamidase/Formamidase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031801.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UV16, F4JS39, Q8LCZ3
      Conserved Domains (1) summary
      pfam03069
      Location:72 → 377
      FmdA_AmdA; Acetamidase/Formamidase family

    2. NM_119919.5 → NP_568028.1  Acetamidase/Formamidase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568028.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UWU8, B9DFI3, Q8LCZ3
      Conserved Domains (1) summary
      pfam03069
      Location:72 → 402
      FmdA_AmdA; Acetamidase/Formamidase family

    3. NM_001342444.1 → NP_001328863.1  Acetamidase/Formamidase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5Z2

    4. NM_001342445.1 → NP_001328862.1  Acetamidase/Formamidase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UXH8, A0A1P8B5Z0, A0A384KVP3, Q8LCZ3

    5. NM_001342446.1 → NP_001328864.1  Acetamidase/Formamidase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5Z4

    6. NM_001204016.1 → NP_001190945.1  Acetamidase/Formamidase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190945.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8LCZ3, Q9SZE9
      Conserved Domains (1) summary
      pfam03069
      Location:72 → 382
      FmdA_AmdA; Acetamidase/Formamidase family
    Nucleotide Protein
    Heading Accession and Version

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