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    COR413-PM2 cold-regulated 413-plasma membrane 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824247, updated on 18-Sep-2024

    Summary

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    Official Symbol
    COR413-PM2
    Official Full Name
    cold-regulated 413-plasma membrane 2
    Primary source
    TAIR:AT3G50830
    Locus tag
    AT3G50830
    See related
    Araport:AT3G50830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATCOR413-PM2; cold-regulated 413-plasma membrane 2
    Summary
    cold acclimation protein WCOR413-like protein beta form. Transcript is not detectable.
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    Genomic context

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    See COR413-PM2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (18893739..18895587, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Phototropic-responsive NPH3 family protein Neighboring gene tRNA-Val Neighboring gene MIP18 family protein (DUF59)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression profiling and bioinformatic analyses of a novel stress-regulated multispanning transmembrane protein family from cereals and Arabidopsis. Breton G, et al. Plant Physiol, 2003 May. PMID 12746512, Free PMC Article
    2. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_114943.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cold-regulated 413-plasma membrane 2
    NP_190652.1
    • cold-regulated 413-plasma membrane 2 (COR413-PM2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: Cold acclimation protein WCOR413 family (TAIR:AT4G37220.1); Has 158 Blast hits to 155 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18893739..18895587 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114943.5 → NP_190652.1  cold-regulated 413-plasma membrane 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190652.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SVL6
      UniProtKB/TrEMBL
      A0A178VJW8, A0A5S9XKE2
      Conserved Domains (1) summary
      pfam05562
      Location:13 → 190
      WCOR413; Cold acclimation protein WCOR413
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SVL6.1

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