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    Ribosomal protein S26e family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824801, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal protein S26e family protein
    Primary source
    TAIR:AT3G56340
    Locus tag
    AT3G56340
    See related
    Araport:AT3G56340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T5P19.4
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (20892007..20893478, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Melibiase family protein Neighboring gene PAP/OAS1 substrate-binding domain superfamily Neighboring gene N2,N2-dimethylguanosine tRNA methyltransferase Neighboring gene Iron/manganese superoxide dismutase family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Late ribosomal protein localization in Arabidopsis thaliana differs to that in Saccharomyces cerevisiae. Palm D, et al. FEBS Open Bio, 2018 Sep. PMID 30186745, Free PMC Article
    2. Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain. Zhao J, et al. Proc Natl Acad Sci U S A, 2013 Nov 26. PMID 24218605, Free PMC Article
    3. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
    4. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
    5. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_115492.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in cytosolic ribosome HDA PubMed 
    part_of cytosolic small ribosomal subunit HDA PubMed 
    colocalizes_with nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    colocalizes_with nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of small ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein S26e family protein
    NP_191193.1
    • Ribosomal protein S26e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S26e (InterPro:IPR000892); BEST Arabidopsis thaliana protein match is: Ribosomal protein S26e family protein (TAIR:AT2G40510.1); Has 761 Blast hits to 761 proteins in 271 species: Archae - 53; Bacteria - 0; Metazoa - 311; Fungi - 152; Plants - 116; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20892007..20893478 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115492.4 → NP_191193.1  Ribosomal protein S26e family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191193.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LYK9
      UniProtKB/TrEMBL
      A0A178VFW7, A0A5S9XN14, A0A654FGB0
      Conserved Domains (1) summary
      PLN00186
      Location:1 → 109
      PLN00186; ribosomal protein S26; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LYK9.1

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