U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    haloacid dehalogenase (HAD) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825052, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    haloacid dehalogenase (HAD) superfamily protein
    Primary source
    TAIR:AT3G58830
    Locus tag
    AT3G58830
    See related
    Araport:AT3G58830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (21754960..21756819, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene metal tolerance protein A2 Neighboring gene F-box/RNI-like superfamily protein Neighboring gene Tropomyosin-like protein Neighboring gene phy rapidly regulated 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Identification and characterization of a plastidial phosphatidylglycerophosphate phosphatase in Arabidopsis thaliana. Zhou Y, et al. Plant J, 2017 Jan. PMID 27614107
    2. Arabidopsis phosphatidylglycerophosphate phosphatase 1 involved in phosphatidylglycerol biosynthesis and photosynthetic function. Lin YC, et al. Plant J, 2016 Dec. PMID 27541283
    3. Phosphatidylglycerophosphate phosphatase is required for root growth in Arabidopsis. Lin YC, et al. Biochim Biophys Acta Mol Cell Biol Lipids, 2018 Jun. PMID 29476828
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. PGPP1 is involved in plastidial phosphatidylglycerol synthesis. [PGPP1]
      Title: Identification and characterization of a plastidial phosphatidylglycerophosphate phosphatase in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    NM_001339941.1
    NM_115745.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphatidylglycerophosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables phosphatidylglycerophosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphatidylglycerophosphatase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chloroplast organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in glycerolipid metabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within lipid biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in phosphatidylglycerol biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within phosphatidylglycerol biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in phospholipid dephosphorylation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in photosynthesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in thylakoid membrane organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    haloacid dehalogenase (HAD) superfamily protein
    NP_191442.2
    • haloacid dehalogenase (HAD) superfamily protein; FUNCTIONS IN: catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIIA (InterPro:IPR006549), Protein of unknown function DUF2010 (InterPro:IPR019001), HAD-superfamily phosphatase, subfamily IIIA (InterPro:IPR010021); Has 1169 Blast hits to 1165 proteins in 593 species: Archae - 0; Bacteria - 976; Metazoa - 0; Fungi - 84; Plants - 42; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21754960..21756819 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339940.1 → NP_001326923.1  haloacid dehalogenase (HAD) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VLA6, Q84VV0, Q9LXR9
      UniProtKB/TrEMBL
      A0A654FJ22
      Conserved Domains (1) summary
      TIGR01668
      Location:154 → 332
      YqeG_hyp_ppase; HAD superfamily (subfamily IIIA) phosphatase, TIGR01668

    2. NM_115745.4 → NP_191442.2  haloacid dehalogenase (HAD) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191442.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A384KLZ2
      Conserved Domains (2) summary
      TIGR01668
      Location:149 → 327
      YqeG_hyp_ppase; HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
      pfam09419
      Location:146 → 295
      PGP_phosphatase; Mitochondrial PGP phosphatase

    3. NM_001339941.1 → NP_001326922.1  haloacid dehalogenase (HAD) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQR3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LXR9.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.