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    RNA-binding KH domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831379, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA-binding KH domain-containing protein
    Primary source
    TAIR:AT5G15270
    Locus tag
    AT5G15270
    See related
    Araport:AT5G15270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8M21.160; F8M21_160
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (4958303..4962102)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ribosomal protein L34e superfamily protein Neighboring gene uncharacterized protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Uncharacterized protein family (UPF0497) Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    2. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001343395.1
    NM_121531.6
    NM_180709.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding KH domain-containing protein
    NP_197031.3
    • RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT1G14170.3); Has 5625 Blast hits to 2559 proteins in 215 species: Archae - 0; Bacteria - 48; Metazoa - 3662; Fungi - 737; Plants - 967; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).
    NP_851040.1
    • RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT1G14170.3); Has 5625 Blast hits to 2559 proteins in 215 species: Archae - 0; Bacteria - 48; Metazoa - 3662; Fungi - 737; Plants - 967; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4958303..4962102
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121531.6 → NP_197031.3  RNA-binding KH domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197031.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKB4, A0A5S9Y4B6, Q0WNX3
      Conserved Domains (2) summary
      cd22459
      Location:49 → 124
      KH-I_PEPPER_rpt1_like; first type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana RNA-binding KH domain-containing protein PEPPER and similar proteins
      cd22460
      Location:371 → 443
      KH-I_PEPPER_rpt2_like; second type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana RNA-binding KH domain-containing protein PEPPER and similar proteins

    2. NM_180709.2 → NP_851040.1  RNA-binding KH domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851040.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKB4, A0A5S9Y4B6, Q0WNX3
      Conserved Domains (2) summary
      cd22459
      Location:49 → 124
      KH-I_PEPPER_rpt1_like; first type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana RNA-binding KH domain-containing protein PEPPER and similar proteins
      cd22460
      Location:371 → 443
      KH-I_PEPPER_rpt2_like; second type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana RNA-binding KH domain-containing protein PEPPER and similar proteins

    3. NM_001343395.1 → NP_001330786.1  RNA-binding KH domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BBW1, Q9LXF5
    Nucleotide Protein
    Heading Accession and Version

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