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    SCL28 SC35-like splicing factor 28 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831999, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SCL28
    Official Full Name
    SC35-like splicing factor 28
    Primary source
    TAIR:AT5G18810
    Locus tag
    AT5G18810
    See related
    Araport:AT5G18810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    At-SCL28; F17K4.60; F17K4_60; SC35-like splicing factor 28
    Summary
    encodes an SC35-like splicing factor of 28 kD localized to the nuclear specks. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.
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    Genomic context

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    See SCL28 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (6268644..6271325, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene F-box/RNI-like superfamily protein Neighboring gene Ribosomal protein L33 family protein Neighboring gene Cox19-like CHCH family protein Neighboring gene TCP-1/cpn60 chaperonin family protein Neighboring gene squamosa promoter binding protein-like 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SCARECROW-LIKE28 modulates organ growth in Arabidopsis by controlling mitotic cell cycle exit, endoreplication, and cell expansion dynamics. Goldy C, et al. New Phytol, 2023 Mar. PMID 36451535
    2. The Arabidopsis GRAS-type SCL28 transcription factor controls the mitotic cell cycle and division plane orientation. Goldy C, et al. Proc Natl Acad Sci U S A, 2021 Feb 9. PMID 33526654, Free PMC Article
    3. Plant-specific SR-related protein atSR45a interacts with spliceosomal proteins in plant nucleus. Tanabe N, et al. Plant Mol Biol, 2009 Jun. PMID 19238562
    4. Interactions of Arabidopsis RS domain containing cyclophilins with SR proteins and U1 and U11 small nuclear ribonucleoprotein-specific proteins suggest their involvement in pre-mRNA Splicing. Lorkovic ZJ, et al. J Biol Chem, 2004 Aug 6. PMID 15166240
    5. Co-localisation studies of Arabidopsis SR splicing factors reveal different types of speckles in plant cell nuclei. Lorković ZJ, et al. Exp Cell Res, 2008 Oct 15. PMID 18674533

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SCARECROW-LIKE28 modulates organ growth in Arabidopsis by controlling mitotic cell cycle exit, endoreplication, and cell expansion dynamics.
      Title: SCARECROW-LIKE28 modulates organ growth in Arabidopsis by controlling mitotic cell cycle exit, endoreplication, and cell expansion dynamics.
    2. The Arabidopsis GRAS-type SCL28 transcription factor controls the mitotic cell cycle and division plane orientation.
      Title: The Arabidopsis GRAS-type SCL28 transcription factor controls the mitotic cell cycle and division plane orientation.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001343570.1
    NM_121886.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA splicing, via spliceosome TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear speck IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SC35-like splicing factor 28
    NP_197382.3
    • SC35-like splicing factor 28 (SCL28); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 30A (TAIR:AT3G13570.1); Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6268644..6271325 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121886.4 → NP_197382.3  SC35-like splicing factor 28 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197382.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0MFG8, Q1PDV2, Q8GTR7, Q9FYB0
      UniProtKB/TrEMBL
      A0A178UBM0, A0A7G2FBK8
      Conserved Domains (1) summary
      cl17169
      Location:47 → 130
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. NM_001343570.1 → NP_001331795.1  SC35-like splicing factor 28 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BF01, A0A7G2FBK8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1PDV2.1

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