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    YSL2 YELLOW STRIPE like 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832509, updated on 18-Sep-2024

    Summary

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    Official Symbol
    YSL2
    Official Full Name
    YELLOW STRIPE like 2
    Primary source
    TAIR:AT5G24380
    Locus tag
    AT5G24380
    See related
    Araport:AT5G24380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATYSL2; K16H17.9; K16H17_9; YELLOW STRIPE like 2; YELLOW STRIPE LIKE 2
    Summary
    closest Arabidopsis homolog of Zea maize metal-phytosiderophore/metal-nicotianamine transporter ZmYS1
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    Genomic context

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    See YSL2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (8323895..8326705)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene inositol requiring 1-1 Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein Neighboring gene NagB/RpiA/CoA transferase-like superfamily protein Neighboring gene 6-phosphogluconolactonase 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A putative function for the arabidopsis Fe-Phytosiderophore transporter homolog AtYSL2 in Fe and Zn homeostasis. Schaaf G, et al. Plant Cell Physiol, 2005 May. PMID 15753101
    2. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtYSL2 is involved Fe and Zn homeostasis [AtYSL2]
      Title: A putative function for the arabidopsis Fe-Phytosiderophore transporter homolog AtYSL2 in Fe and Zn homeostasis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_122346.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables oligopeptide transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    NOT involved_in iron ion transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to iron ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to zinc ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    YELLOW STRIPE like 2
    NP_197826.2
    • YELLOW STRIPE like 2 (YSL2); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, response to zinc ion, response to iron ion; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 3 (TAIR:AT5G53550.2); Has 1729 Blast hits to 1686 proteins in 542 species: Archae - 19; Bacteria - 859; Metazoa - 0; Fungi - 253; Plants - 459; Viruses - 1; Other Eukaryotes - 138 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8323895..8326705
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122346.3 → NP_197826.2  YELLOW STRIPE like 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197826.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WUE8, Q6R3K9, Q8L750, Q9FIN4
      UniProtKB/TrEMBL
      A0A178UN39
      Conserved Domains (1) summary
      pfam03169
      Location:30 → 648
      OPT; OPT oligopeptide transporter protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6R3K9.1

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