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    Copia-like polyprotein/retrotransposon [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834857, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Copia-like polyprotein/retrotransposon
    Primary source
    TAIR:AT5G48050
    Locus tag
    AT5G48050
    See related
    Araport:AT5G48050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MDN11.13; MDN11_13
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (19472446..19473838, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene gametophytic factor 2 Neighboring gene Ubiquitin carboxyl-terminal hydrolase family protein Neighboring gene C2 calcium/lipid-binding plant phosphoribosyltransferase family protein Neighboring gene xyloglucan endotransglucosylase/hydrolase 20

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Copia-like polyprotein/retrotransposon
    NP_199616.1
    • CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19472446..19473838 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124179.2 → NP_199616.1  Copia-like polyprotein/retrotransposon [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199616.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEC7, A0A5S9YCB2, Q9FI33
      Conserved Domains (1) summary
      pfam14223
      Location:67 → 200
      Retrotran_gag_2; gag-polypeptide of LTR copia-type
    Nucleotide Protein
    Heading Accession and Version

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