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    RNA-binding CRS1 / YhbY (CRM) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835580, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA-binding CRS1 / YhbY (CRM) domain-containing protein
    Primary source
    TAIR:AT5G54890
    Locus tag
    AT5G54890
    See related
    Araport:AT5G54890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MBG8.16; MBG8_16; mCSF2; mitochondrial CAF-like splicing factor 2
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (22293325..22295144)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene inositol-1,4,5-trisphosphate 5-phosphatase Neighboring gene DTW domain-containing protein Neighboring gene RNA-binding protein 45A Neighboring gene DEA(D/H)-box RNA helicase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. mCSF1, a nucleus-encoded CRM protein required for the processing of many mitochondrial introns, is involved in the biogenesis of respiratory complexes I and IV in Arabidopsis. Zmudjak M, et al. New Phytol, 2013 Jul. PMID 23646912
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    NM_124871.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in Group II intron splicing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding CRS1 / YhbY (CRM) domain-containing protein
    NP_200300.1
    • RNA-binding CRS1 / YhbY (CRM) domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, C globular stage, F mature embryo stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain-containing protein (TAIR:AT4G31010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22293325..22295144
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124871.3 → NP_200300.1  RNA-binding CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200300.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FFU1
      UniProtKB/TrEMBL
      A0A178UQZ4, A0A5S9YE50
      Conserved Domains (1) summary
      smart01103
      Location:143 → 228
      CRS1_YhbY; Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FFU1.1

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