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    ASD2 alpha-L-arabinofuranosidase 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832681, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ASD2
    Official Full Name
    alpha-L-arabinofuranosidase 2
    Primary source
    TAIR:AT5G26120
    Locus tag
    AT5G26120
    See related
    Araport:AT5G26120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    alpha-L-arabinofuranosidase 2; ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 2; ATASD2; T1N24.13; T1N24_13
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    Genomic context

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    See ASD2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    18
    Sequence:
    Chromosome: 5; NC_003076.8 (9121675..9125967, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Neighboring gene Putative lysine decarboxylase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_122513.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables alpha-L-arabinofuranosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in L-arabinose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    alpha-L-arabinofuranosidase 2
    NP_197984.2
    • alpha-L-arabinofuranosidase 2 (ASD2); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, alpha-N-arabinofuranosidase activity; INVOLVED IN: L-arabinose metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Alpha-L-arabinofuranosidase, C-terminal (InterPro:IPR010720), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: alpha-L-arabinofuranosidase 1 (TAIR:AT3G10740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      9121675..9125967 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122513.4 → NP_197984.2  alpha-L-arabinofuranosidase 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197984.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VZR2, Q9XH04
      UniProtKB/TrEMBL
      A0A5S9Y7U9, A0A654G479
      Conserved Domains (1) summary
      smart00813
      Location:463 → 646
      Alpha-L-AF_C; Alpha-L-arabinofuranosidase C-terminus
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VZR2.1

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