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    ERF13 ethylene-responsive element binding factor 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819093, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ERF13
    Official Full Name
    ethylene-responsive element binding factor 13
    Primary source
    TAIR:AT2G44840
    Locus tag
    AT2G44840
    See related
    Araport:AT2G44840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATERF13; EREBP; ethylene-responsive element binding factor 13; ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13; T13E15.15
    Summary
    encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
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    Genomic context

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    See ERF13 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (18495215..18496327)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene axoneme-associated protein MST101(2) protein Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and functional characterization of CE1 binding proteins. Lee SJ, et al. BMC Plant Biol, 2010 Dec 16. PMID 21162722, Free PMC Article
    2. MPK14-mediated auxin signaling controls lateral root development via ERF13-regulated very-long-chain fatty acid biosynthesis. Lv B, et al. Mol Plant, 2021 Feb 1. PMID 33221411
    3. Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves. Welsch R, et al. Plant Physiol, 2007 Nov. PMID 17873090, Free PMC Article
    4. The AP2/EREBP family of plant transcription factors. Riechmann JL, et al. Biol Chem, 1998 Jun. PMID 9687012
    5. Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors. Sparks EE, et al. Dev Cell, 2016 Dec 5. PMID 27923776, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. MPK14-mediated auxin signaling controls lateral root development via ERF13-regulated very-long-chain fatty acid biosynthesis.
      Title: MPK14-mediated auxin signaling controls lateral root development via ERF13-regulated very-long-chain fatty acid biosynthesis.
    2. Data show that AtERF13 (At2g44840), one of the CEBFs, confers ABA hypersensitivity.
      Title: Isolation and functional characterization of CE1 binding proteins.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_130048.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within ethylene-activated signaling pathway TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in intracellular anatomical structure TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in nucleus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ethylene-responsive element binding factor 13
    NP_182011.1
    • ethylene-responsive element binding factor 13 (ERF13); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene responsive element binding factor 1 (TAIR:AT4G17500.1); Has 5576 Blast hits to 5517 proteins in 249 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 5557; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18495215..18496327
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130048.3 → NP_182011.1  ethylene-responsive element binding factor 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182011.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22167, Q8L9K1
      UniProtKB/TrEMBL
      A0A178W1M8, A0A5S9X7J2
      Conserved Domains (1) summary
      smart00380
      Location:91 → 151
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L9K1.2

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