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    ABF1 abscisic acid responsive element-binding factor 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841395, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ABF1
    Official Full Name
    abscisic acid responsive element-binding factor 1
    Primary source
    TAIR:AT1G49720
    Locus tag
    AT1G49720
    See related
    Araport:AT1G49720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    abscisic acid responsive element-binding factor 1; AtABF1; F14J22.7; F14J22_7
    Summary
    Identified as a protein that binds to abscisic acid response elements. May mediate transcriptional regulation of ABA responses.
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    Genomic context

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    See ABF1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (18400003..18402628)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Defensin-like (DEFL) family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein Neighboring gene PLC-like phosphodiesterases superfamily protein Neighboring gene Leucine-rich repeat (LRR) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Abscisic acid signaling in seeds and seedlings. Finkelstein RR, et al. Plant Cell, 2002. PMID 12045268, Free PMC Article
    2. Abscisic acid response element binding factor 1 is required for establishment of Arabidopsis seedlings during winter. Sharma PD, et al. Mol Biol Rep, 2011 Nov. PMID 21181499
    3. Four Arabidopsis AREB/ABF transcription factors function predominantly in gene expression downstream of SnRK2 kinases in abscisic acid signalling in response to osmotic stress. Yoshida T, et al. Plant Cell Environ, 2015 Jan. PMID 24738645, Free PMC Article
    4. Arabidopsis thaliana trehalose-6-phosphate phosphatase gene TPPI enhances drought tolerance by regulating stomatal apertures. Lin Q, et al. J Exp Bot, 2020 Jul 6. PMID 32242234
    5. ABFs, a family of ABA-responsive element binding factors. Choi H, et al. J Biol Chem, 2000 Jan 21. PMID 10636868

    See all (25) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. the role of ABF1/3/4 in det1 germination phenotypes
      Title: Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions.
    2. The four AREB/ABFs are the predominant transcription factors downstream of SRK2D/E/I in abscisic acid (ABA) signalling in response to osmotic stress during vegetative growth.
      Title: Four Arabidopsis AREB/ABF transcription factors function predominantly in gene expression downstream of SnRK2 kinases in abscisic acid signalling in response to osmotic stress.
    3. ABF1 and ABF3 abundance is affected by ABA and KEG
      Title: ABA and the ubiquitin E3 ligase KEEP ON GOING affect proteolysis of the Arabidopsis thaliana transcription factors ABF1 and ABF3.
    4. These studies on abscisic acid response element binding factor 1 (ABF1) gene in Arabidopsis demonstrate that it is required for seedling establishment during winter.
      Title: Abscisic acid response element binding factor 1 is required for establishment of Arabidopsis seedlings during winter.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001198254.2
    NM_001333400.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific DNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within abscisic acid-activated signaling pathway TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    abscisic acid responsive element-binding factor 1
    NP_001185183.1
    • abscisic acid responsive element-binding factor 1 (ABF1); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: ABRE binding factor 4 (TAIR:AT3G19290.1).
    NP_564551.1
    • abscisic acid responsive element-binding factor 1 (ABF1); FUNCTIONS IN: protein binding, DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: abscisic acid mediated signaling pathway, regulation of transcription, DNA-dependent, response to stress; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: ABRE binding factor 4 (TAIR:AT3G19290.1); Has 1956 Blast hits to 1888 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 452; Fungi - 28; Plants - 1407; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18400003..18402628
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103859.5 → NP_564551.1  abscisic acid responsive element-binding factor 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564551.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FX98, Q9M7Q5
      UniProtKB/TrEMBL
      A0A178WH34, A0A178WIY0, A0A5S9WQA9
      Conserved Domains (1) summary
      cd14707
      Location:313 → 363
      bZIP_plant_BZIP46; Basic leucine zipper (bZIP) domain of uncharaterized Plant BZIP transcription factors: a DNA-binding and dimerization domain

    2. NM_001198254.2 → NP_001185183.1  abscisic acid responsive element-binding factor 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185183.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WIY0, F4I3C9
      Conserved Domains (1) summary
      cd14707
      Location:313 → 363
      bZIP_plant_BZIP46; Basic leucine zipper (bZIP) domain of uncharaterized Plant BZIP transcription factors: a DNA-binding and dimerization domain

    3. NM_001333400.1 → NP_001322564.1  abscisic acid responsive element-binding factor 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FX98, Q9M7Q5
      UniProtKB/TrEMBL
      A0A178WH34, A0A178WIY0, A0A5S9WQA9
      Conserved Domains (1) summary
      cd14707
      Location:313 → 363
      bZIP_plant_BZIP46; Basic leucine zipper (bZIP) domain of uncharaterized Plant BZIP transcription factors: a DNA-binding and dimerization domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M7Q5.1

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