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    trimethylguanosine synthase (DUF707) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837320, updated on 18-Sep-2024

    Summary

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    Official Full Name
    trimethylguanosine synthase (DUF707)
    Primary source
    TAIR:AT1G08040
    Locus tag
    AT1G08040
    See related
    Araport:AT1G08040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T6D22.12; T6D22_12
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    15
    Sequence:
    Chromosome: 1; NC_003070.9 (2495309..2498764, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GATA transcription factor 11 Neighboring gene tyrosylprotein sulfotransferase Neighboring gene uncharacterized protein Neighboring gene Zinc finger (C3HC4-type RING finger) family protein Neighboring gene ATP-dependent helicase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
    2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001035917.1
    NM_001331753.1
    NM_001331754.1
    NM_100678.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in Golgi trans cisterna HDA PubMed 
    located_in endosome HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in trans-Golgi network HDA PubMed 

    General protein information

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    Preferred Names
    trimethylguanosine synthase (DUF707)
    NP_001030994.1
    • Protein of unknown function (DUF707); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT2G28310.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_563805.1
    • Protein of unknown function (DUF707); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT2G28310.3); Has 328 Blast hits to 327 proteins in 28 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2495309..2498764 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100678.3 → NP_563805.1  trimethylguanosine synthase (DUF707) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563805.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WIU3, A0A384LJC2, Q93ZR2
      Conserved Domains (1) summary
      pfam05212
      Location:85 → 372
      DUF707; Protein of unknown function (DUF707)

    2. NM_001331753.1 → NP_001322760.1  trimethylguanosine synthase (DUF707) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AV11

    3. NM_001331754.1 → NP_001322761.1  trimethylguanosine synthase (DUF707) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WIU3, A0A384LJC2, Q93ZR2
      Conserved Domains (1) summary
      pfam05212
      Location:85 → 372
      DUF707; Protein of unknown function (DUF707)

    4. NM_001035917.1 → NP_001030994.1  trimethylguanosine synthase (DUF707) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030994.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WIU3, A0A384LJC2, Q93ZR2
      Conserved Domains (1) summary
      pfam05212
      Location:85 → 372
      DUF707; Protein of unknown function (DUF707)
    Nucleotide Protein
    Heading Accession and Version

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