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    DUF5 polyribonucleotide phosphorylase, putative (DOMAIN OF UNKNOWN FUNCTION 724 5) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819335, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DUF5
    Official Full Name
    polyribonucleotide phosphorylase, putative (DOMAIN OF UNKNOWN FUNCTION 724 5)
    Primary source
    TAIR:AT2G47220
    Locus tag
    AT2G47220
    See related
    Araport:AT2G47220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATDUF5; DOMAIN OF UNKNOWN FUNCTION 724 5; T8I13.6
    Summary
    Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype
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    Genomic context

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    See DUF5 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (19383743..19386954)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene myb-like transcription factor family protein Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 6) Neighboring gene AMP-dependent synthetase and ligase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of DUF724 gene family in Arabidopsis thaliana. Cao X, et al. Plant Mol Biol, 2010 Jan. PMID 19795213
    2. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_130290.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein homodimerization activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast stroma HDA PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyribonucleotide phosphorylase, putative (DOMAIN OF UNKNOWN FUNCTION 724 5)
    NP_182244.2
    • DOMAIN OF UNKNOWN FUNCTION 724 5 (DUF5); FUNCTIONS IN: 3'-5'-exoribonuclease activity, oxidoreductase activity, RNA binding; INVOLVED IN: metabolic process, RNA processing; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: lateral root emergence; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Protein of unknown function DUF724 (InterPro:IPR007930), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 2 (TAIR:AT1G11420.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19383743..19386954
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130290.2 → NP_182244.2  polyribonucleotide phosphorylase, putative (DOMAIN OF UNKNOWN FUNCTION 724 5) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182244.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F3Y6
      Conserved Domains (3) summary
      PLN00207
      Location:7 → 108
      PLN00207; polyribonucleotide nucleotidyltransferase; Provisional
      pfam05266
      Location:285 → 469
      DUF724; Protein of unknown function (DUF724)
      cl21454
      Location:106 → 176
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    Nucleotide Protein
    Heading Accession and Version

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