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    Mechanosensitive ion channel family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816203, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Mechanosensitive ion channel family protein
    Primary source
    TAIR:AT2G17000
    Locus tag
    AT2G17000
    See related
    Araport:AT2G17000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6P23.16; F6P23_16
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (7388893..7392302, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Major facilitator superfamily protein Neighboring gene Mechanosensitive ion channel family protein Neighboring gene F-box/RNI-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    Mechanosensitive ion channel family protein
    NP_179292.1
    • Mechanosensitive ion channel family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: embryo, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 6 (TAIR:AT1G78610.1); Has 1986 Blast hits to 1976 proteins in 685 species: Archae - 66; Bacteria - 1304; Metazoa - 0; Fungi - 206; Plants - 211; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7388893..7392302 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127253.1 → NP_179292.1  Mechanosensitive ion channel family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179292.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IME1
      UniProtKB/TrEMBL
      A0A5S9WYV5
      Conserved Domains (2) summary
      COG0668
      Location:639 → 839
      MscS; Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis]
      pfam00924
      Location:639 → 809
      MS_channel; Mechanosensitive ion channel

    2. NM_001335526.1 → NP_001325106.1  Mechanosensitive ion channel family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B261, A0A5S9WYV5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IME1.1

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