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    Membrane trafficking VPS53 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841519, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Membrane trafficking VPS53 family protein
    Primary source
    TAIR:AT1G50970
    Locus tag
    AT1G50970
    See related
    Araport:AT1G50970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8A12.19; F8A12_19
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    15
    Sequence:
    Chromosome: 1; NC_003070.9 (18896142..18900369)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene protein disulfide-isomerase 5-like protein (DUF1692) Neighboring gene ncRNA Neighboring gene gibberellin 2-oxidase 7 Neighboring gene F-box/RNI-like/FBD-like domains-containing protein Neighboring gene kinase with tetratricopeptide repeat domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_103977.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of GARP complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Membrane trafficking VPS53 family protein
    NP_175510.2
    • Membrane trafficking VPS53 family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Vps53-like, N-terminal (InterPro:IPR007234); BEST Arabidopsis thaliana protein match is: Membrane trafficking VPS53 family protein (TAIR:AT1G50500.1); Has 637 Blast hits to 448 proteins in 205 species: Archae - 2; Bacteria - 36; Metazoa - 221; Fungi - 169; Plants - 87; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18896142..18900369
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333461.1 → NP_001323304.1  Membrane trafficking VPS53 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWQ9, A0A654ET43

    2. NM_001333462.1 → NP_001323305.1  Membrane trafficking VPS53 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWN0, A0A654ET43

    3. NM_103977.2 → NP_175510.2  Membrane trafficking VPS53 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175510.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I7Y2, Q683B5, Q9C6I3
      UniProtKB/TrEMBL
      A0A654ET43
      Conserved Domains (1) summary
      pfam04100
      Location:1 → 380
      Vps53_N; Vps53-like, N-terminal
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4I7Y2.1

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