U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Outer arm dynein light chain 1 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828003, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Outer arm dynein light chain 1 protein
    Primary source
    TAIR:AT4G03260
    Locus tag
    AT4G03260
    See related
    Araport:AT4G03260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4C21.19; F4C21_19
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (1428102..1432690)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene G-type lectin S-receptor-like Serine/Threonine-kinase Neighboring gene Homeodomain-like superfamily protein Neighboring gene frataxin-like protein Neighboring gene Cyclin D6;1 Neighboring gene tRNA-Thr Neighboring gene photosynthetic electron transfer C

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Spatial differences in stoichiometry of EGR phosphatase and Microtubule-associated Stress Protein 1 control root meristem activity during drought stress. Longkumer T, et al. Plant Cell, 2022 Feb 3. PMID 34865106, Free PMC Article
    2. Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response. Bhaskara GB, et al. Plant Cell, 2017 Jan. PMID 28011693, Free PMC Article
    3. Autophosphorylation profiling of Arabidopsis protein kinases using the cell-free system. Nemoto K, et al. Phytochemistry, 2011 Jul. PMID 21477822
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001125453.2
    NM_001340441.1
    NM_001340442.1
    NM_116564.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables microtubule binding IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity HDA PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within drought recovery IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within microtubule cytoskeleton organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within negative regulation of growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within protein autophosphorylation HDA PubMed 
    Component Evidence Code Pubs
    located_in cell cortex region IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Outer arm dynein light chain 1 protein
    NP_001118925.1
    • Outer arm dynein light chain 1 protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT1G78230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_192235.3
    • Outer arm dynein light chain 1 protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT1G78230.1); Has 15176 Blast hits to 10896 proteins in 720 species: Archae - 14; Bacteria - 5530; Metazoa - 6175; Fungi - 776; Plants - 1251; Viruses - 25; Other Eukaryotes - 1405 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      1428102..1432690
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116564.4 → NP_192235.3  Outer arm dynein light chain 1 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192235.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V3U0, A0A5S9XPH2, Q8GUJ5
      Conserved Domains (4) summary
      cd00116
      Location:362 → 563
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00031
      Location:421 → 442
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:400 → 420
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:463 → 520
      LRR_8; Leucine rich repeat

    2. NM_001125453.2 → NP_001118925.1  Outer arm dynein light chain 1 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118925.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V3U0, A0A5S9XPH2, Q8GUJ5
      Conserved Domains (4) summary
      cd00116
      Location:362 → 563
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00031
      Location:421 → 442
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:400 → 420
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:463 → 520
      LRR_8; Leucine rich repeat

    3. NM_001340441.1 → NP_001328895.1  Outer arm dynein light chain 1 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V3U0, A0A5S9XPH2, Q8GUJ5

    4. NM_001340442.1 → NP_001328894.1  Outer arm dynein light chain 1 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V3U0, A0A5S9XPH2, Q8GUJ5
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools