U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SBP (S-ribonuclease binding protein) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829659, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    SBP (S-ribonuclease binding protein) family protein
    Primary source
    TAIR:AT4G35070
    Locus tag
    AT4G35070
    See related
    Araport:AT4G35070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T12J5.5
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (16694044..16695711)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Basic-leucine zipper (bZIP) transcription factor family protein Neighboring gene Transducin family protein / WD-40 repeat family protein Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene high-affinity nickel-transport family protein Neighboring gene catalase 2 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001085024.2
    NM_119673.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    SBP (S-ribonuclease binding protein) family protein
    NP_001078493.1
    • SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: S-ribonuclease binding protein 1 (TAIR:AT1G45976.1); Has 698 Blast hits to 689 proteins in 99 species: Archae - 0; Bacteria - 9; Metazoa - 204; Fungi - 4; Plants - 376; Viruses - 12; Other Eukaryotes - 93 (source: NCBI BLink).
    NP_195233.2
    • SBP (S-ribonuclease binding protein) family protein; CONTAINS InterPro DOMAIN/s: S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: S-ribonuclease binding protein 1 (TAIR:AT1G45976.1); Has 975 Blast hits to 929 proteins in 127 species: Archae - 2; Bacteria - 21; Metazoa - 288; Fungi - 13; Plants - 377; Viruses - 18; Other Eukaryotes - 256 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16694044..16695711
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119673.5 → NP_195233.2  SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195233.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UTK0, A0A5S9XYR5, Q66GR4
      Conserved Domains (3) summary
      PRK10929
      Location:79 → 179
      PRK10929; putative mechanosensitive channel protein; Provisional
      cd00162
      Location:217 → 252
      RING_Ubox; modified RING-HC finger (C3HC5-type) [structural motif]
      cl17238
      Location:217 → 252
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. NM_001085024.2 → NP_001078493.1  SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078493.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MQI2
      Conserved Domains (1) summary
      pfam13920
      Location:161 → 204
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.