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    Pleckstrin homology (PH) and lipid-binding START domains-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824645, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pleckstrin homology (PH) and lipid-binding START domains-containing protein
    Primary source
    TAIR:AT3G54800
    Locus tag
    AT3G54800
    See related
    Araport:AT3G54800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    15
    Sequence:
    Chromosome: 3; NC_003074.8 (20286070..20290268)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Zinc finger (C3HC4-type RING finger) family protein Neighboring gene ARM repeat superfamily protein Neighboring gene ncRNA Neighboring gene Plant-specific GATA-type zinc finger transcription factor family protein Neighboring gene plasma membrane intrinsic protein 2;5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Learning the lipid language of plant signalling. van Leeuwen W, et al. Trends Plant Sci, 2004 Aug. PMID 15358268
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001035785.2
    NM_115337.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphatidylinositol binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within signal transduction ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Pleckstrin homology (PH) and lipid-binding START domains-containing protein
    NP_001030862.1
    • Pleckstrin homology (PH) and lipid-binding START domains-containing protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769), Lipid-binding START (InterPro:IPR002913), Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: Pleckstrin homology (PH) and lipid-binding START domains-containing protein (TAIR:AT2G28320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_191040.2
    • Pleckstrin homology (PH) and lipid-binding START domains-containing protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769), Lipid-binding START (InterPro:IPR002913), Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: Pleckstrin homology (PH) and lipid-binding START domains-containing protein (TAIR:AT2G28320.1); Has 535 Blast hits to 513 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 0; Plants - 352; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20286070..20290268
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115337.3 → NP_191040.2  Pleckstrin homology (PH) and lipid-binding START domains-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191040.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VAY4, B9DGX7, Q8GXW4
      Conserved Domains (4) summary
      cd00177
      Location:177 → 342
      START; Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins
      smart00233
      Location:10 → 115
      PH; Pleckstrin homology domain
      PLN00188
      Location:11 → 730
      PLN00188; enhanced disease resistance protein (EDR2); Provisional
      pfam07059
      Location:518 → 724
      DUF1336; Protein of unknown function (DUF1336)

    2. NM_001035785.2 → NP_001030862.1  Pleckstrin homology (PH) and lipid-binding START domains-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030862.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VAY4, B9DGX7, Q8GXW4
      Conserved Domains (4) summary
      cd00177
      Location:177 → 342
      START; Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins
      smart00233
      Location:10 → 115
      PH; Pleckstrin homology domain
      PLN00188
      Location:11 → 730
      PLN00188; enhanced disease resistance protein (EDR2); Provisional
      pfam07059
      Location:518 → 724
      DUF1336; Protein of unknown function (DUF1336)
    Nucleotide Protein
    Heading Accession and Version

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