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    asterix-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830690, updated on 18-Sep-2024

    Summary

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    Official Full Name
    asterix-like protein
    Primary source
    TAIR:AT5G07960
    Locus tag
    AT5G07960
    See related
    Araport:AT5G07960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13G24.160
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (2542246..2543646)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene MEI2 C-terminal RRM only like 2 Neighboring gene dentin sialophosphoprotein-like protein Neighboring gene uncharacterized protein Neighboring gene dentin sialophosphoprotein-like protein Neighboring gene dentin sialophosphoprotein-like protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_120878.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein insertion into ER membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    asterix-like protein
    NP_196413.1
    • unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); Has 193 Blast hits to 193 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2542246..2543646
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120878.3 → NP_196413.1  asterix-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196413.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SD88
      UniProtKB/TrEMBL
      A0A178UBI2, A0A384KB20, Q0WU11
      Conserved Domains (1) summary
      pfam03669
      Location:10 → 105
      UPF0139; Uncharacterized protein family (UPF0139)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SD88.1

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