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    Polyketide cyclase/dehydrase and lipid transport superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835505, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Polyketide cyclase/dehydrase and lipid transport superfamily protein
    Primary source
    TAIR:AT5G54170
    Locus tag
    AT5G54170
    See related
    Araport:AT5G54170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K18G13.4; K18G13_4
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (21984878..21987489, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene O-methyltransferase 1 Neighboring gene Avr9/Cf-9 rapidly elicited protein Neighboring gene ncRNA Neighboring gene plastid transcriptionally active 15 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A downstream mediator in the growth repression limb of the jasmonate pathway. Yan Y, et al. Plant Cell, 2007 Aug. PMID 17675405, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_124797.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Polyketide cyclase/dehydrase and lipid transport superfamily protein
    NP_568805.1
    • Polyketide cyclase/dehydrase and lipid transport superfamily protein; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G64720.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21984878..21987489 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124797.5 → NP_568805.1  Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568805.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UN20, A0A654GAU4, F4JYV3
      Conserved Domains (1) summary
      cd08870
      Location:127 → 337
      START_STARD2_7-like; Lipid-binding START domain of mammalian STARD2, -7, and related proteins
    Nucleotide Protein
    Heading Accession and Version

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