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    RTFL5 ROTUNDIFOLIA like 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836070, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RTFL5
    Official Full Name
    ROTUNDIFOLIA like 5
    Primary source
    TAIR:AT5G59510
    Locus tag
    AT5G59510
    See related
    Araport:AT5G59510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DEVIL 18; DVL18; F2O15.21; F2O15_21; ROTUNDIFOLIA like 5
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    Genomic context

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    See RTFL5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (23989755..23990824)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase Neighboring gene ncRNA Neighboring gene ZRT/IRT-like protein 2 Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. DVL, a novel class of small polypeptides: overexpression alters Arabidopsis development. Wen J, et al. Plant J, 2004 Mar. PMID 14871303
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_125343.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in negative regulation of cell population proliferation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within shoot system development ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    ROTUNDIFOLIA like 5
    NP_200759.2
    • ROTUNDIFOLIA like 5 (RTFL5); CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: ROTUNDIFOLIA like 4 (TAIR:AT3G46613.1); Has 187 Blast hits to 178 proteins in 36 species: Archae - 0; Bacteria - 8; Metazoa - 22; Fungi - 25; Plants - 122; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23989755..23990824
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125343.3 → NP_200759.2  ROTUNDIFOLIA like 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200759.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LE84
      UniProtKB/TrEMBL
      A0A178U8M6, A0A5S9YG08
      Conserved Domains (1) summary
      pfam08137
      Location:118 → 136
      DVL; DVL family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LE84.1

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