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    SNL4 SIN3-like 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843342, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SNL4
    Official Full Name
    SIN3-like 4
    Primary source
    TAIR:AT1G70060
    Locus tag
    AT1G70060
    See related
    Araport:AT1G70060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20P5.21; F20P5_21; SIN3-like 4
    Summary
    Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190).
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    Genomic context

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    See SNL4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    22
    Sequence:
    Chromosome: 1; NC_003070.9 (26383216..26389916)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Pro Neighboring gene ncRNA Neighboring gene DEAD/DEAH box helicase Neighboring gene Terpenoid cyclases/Protein prenyltransferases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001334433.1
    NM_105674.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SIN3-like 4
    NP_177163.3
    • SIN3-like 4 (SNL4); INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 3 (TAIR:AT1G24190.2); Has 2571 Blast hits to 1108 proteins in 232 species: Archae - 4; Bacteria - 56; Metazoa - 1028; Fungi - 808; Plants - 415; Viruses - 14; Other Eukaryotes - 246 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26383216..26389916
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105674.6 → NP_177163.3  SIN3-like 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177163.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I3W8, O04539
      UniProtKB/TrEMBL
      A0A5S9WT14
      Conserved Domains (4) summary
      COG5602
      Location:4 → 803
      Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]
      pfam02671
      Location:31 → 75
      PAH; Paired amphipathic helix repeat
      pfam08295
      Location:442 → 533
      Sin3_corepress; Sin3 family co-repressor
      pfam16879
      Location:1039 → 1284
      Sin3a_C; C-terminal domain of Sin3a protein

    2. NM_001334433.1 → NP_001323064.1  SIN3-like 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I3W8, O04539
      UniProtKB/TrEMBL
      A0A5S9WT14
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O04539.3

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