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    plant/protein (Protein of unknown function, DUF538) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837452, updated on 18-Sep-2024

    Summary

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    Official Full Name
    plant/protein (Protein of unknown function, DUF538)
    Primary source
    TAIR:AT1G09310
    Locus tag
    AT1G09310
    See related
    Araport:AT1G09310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T31J12.3; T31J12_3
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (3008910..3009898)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene importin alpha isoform 4 Neighboring gene rhodanese-like domain protein Neighboring gene uncharacterized protein Neighboring gene Metallopeptidase M24 family protein Neighboring gene agenet domain-containing protein Neighboring gene golgi apparatus membrane protein-like protein ECHIDNA protein Neighboring gene chloroplast RNA binding protein Neighboring gene galactinol synthase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SMALLER TRICHOMES WITH VARIABLE BRANCHES (SVB) and its homolog SVBL act downstream of transcription factor NAC089 and function redundantly in Arabidopsis unfolded protein response. Yu CY, et al. J Exp Bot, 2023 Sep 29. PMID 37578504
    2. A pair of DUF538 domain-containing proteins modulates plant growth and trichome development through the transcriptional regulation of GLABRA1 in Arabidopsis thaliana. Yu CY, et al. Plant J, 2021 Nov. PMID 34496091
    3. Involvement of ABA Responsive SVB Genes in the Regulation of Trichome Formation in Arabidopsis. Hussain S, et al. Int J Mol Sci, 2021 Jun 24. PMID 34202673, Free PMC Article
    4. The Arabidopsis metacaspase9 degradome. Tsiatsiani L, et al. Plant Cell, 2013 Aug. PMID 23964026, Free PMC Article
    5. Tandem affinity purification and mass spectrometric analysis of ubiquitylated proteins in Arabidopsis. Saracco SA, et al. Plant J, 2009 Jul. PMID 19292762, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A pair of DUF538 domain-containing proteins modulates plant growth and trichome development through the transcriptional regulation of GLABRA1 in Arabidopsis thaliana.
      Title: A pair of DUF538 domain-containing proteins modulates plant growth and trichome development through the transcriptional regulation of GLABRA1 in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_100801.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within endoplasmic reticulum unfolded protein response IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in response to abscisic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in trichome patterning IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in apoplast HDA PubMed 
    located_in cytosol HDA PubMed 
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region HDA PubMed 
    located_in late endosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plant/protein (Protein of unknown function, DUF538)
    NP_563841.1
    • Protein of unknown function, DUF538; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT1G56580.1); Has 409 Blast hits to 409 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 403; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3008910..3009898
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100801.3 → NP_563841.1  plant/protein (Protein of unknown function, DUF538) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563841.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W8C5, A0A5S9TFP6, Q9ZPZ4
      Conserved Domains (1) summary
      pfam04398
      Location:29 → 136
      DUF538; Protein of unknown function, DUF538
    Nucleotide Protein
    Heading Accession and Version

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